Detailed information of SNP:
|
SNP ID:
sf1001393780(Gbrowse)
Chromosome: chr10 Position: 1393780 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.03% | 22.97% |
| All Indica | 799 | 69.34% | 30.66% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 58.67% | 41.33% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001393780 | C->T | INTERGENIC | None |