Detailed information of SNP:
|
SNP ID:
sf1001394768(Gbrowse)
Chromosome: chr10 Position: 1394768 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 77.79% | 22.21% |
| All Indica | 793 | 69.99% | 30.01% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 63 | 7.94% | 92.06% |
| Indica I | 374 | 59.09% | 40.91% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 208 | 81.25% | 18.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001394768 | G->T | INTERGENIC | None |