Detailed information of SNP:
|
SNP ID:
sf1001394922(Gbrowse)
Chromosome: chr10 Position: 1394922 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 85.25% | 14.75% |
| All Indica | 790 | 73.92% | 26.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 62.23% | 37.77% |
| Indica II | 211 | 80.57% | 19.43% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001394922 | G->T | LOC_Os10g03300(LOC_Os10g03300.1) | Non-Synonymous SNP |