Detailed information of SNP:
|
SNP ID:
sf1001394963(Gbrowse)
Chromosome: chr10 Position: 1394963 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 73.83% | 26.17% |
| All Indica | 794 | 94.21% | 5.79% |
| All Japonica | 497 | 36.42% | 63.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 29.55% | 70.45% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001394963 | A->G | LOC_Os10g03300(LOC_Os10g03300.1) | Non-Synonymous SNP |