Detailed information of SNP:
|
SNP ID:
sf1001402265(Gbrowse)
Chromosome: chr10 Position: 1402265 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 79.86% | 20.14% |
| All Indica | 792 | 70.83% | 29.17% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 43 | 16.28% | 83.72% |
| Indica I | 373 | 59.52% | 40.48% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001402265 | G->A | LOC_Os10g03310(LOC_Os10g03310.1) | INTRON |
| sf1001402265 | G->A | LOC_Os10g03310(LOC_Os10g03310.1) | SNPs that disrupt splice sites |