Detailed information of SNP:
|
SNP ID:
sf1001403226(Gbrowse)
Chromosome: chr10 Position: 1403226 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 81.71% | 18.29% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 475 | 54.32% | 45.68% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 313 | 33.23% | 66.77% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001403226 | A->G | INTERGENIC | None |