Detailed information of SNP:
|
SNP ID:
sf1001404039(Gbrowse)
Chromosome: chr10 Position: 1404039 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 82.22% | 17.78% |
| All Indica | 797 | 70.89% | 29.11% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 59.20% | 40.80% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001404039 | C->T | INTERGENIC | None |