Detailed information of SNP:
|
SNP ID:
sf1001422468(Gbrowse)
Chromosome: chr10 Position: 1422468 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 87.26% | 12.74% |
| All Indica | 795 | 98.99% | 1.01% |
| All Japonica | 452 | 65.27% | 34.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 318 | 77.99% | 22.01% |
| Tropical Japonica | 75 | 30.67% | 69.33% |
| Japonica Intermediate | 59 | 40.68% | 59.32% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001422468 | C->T | LOC_Os10g03350(LOC_Os10g03350.1) | Synonymous |