Detailed information of SNP:
|
SNP ID:
sf1001425256(Gbrowse)
Chromosome: chr10 Position: 1425256 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.10% | 43.90% |
| All Indica | 799 | 63.83% | 36.17% |
| All Japonica | 497 | 49.70% | 50.30% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001425256 | T->G | INTERGENIC | None |