Detailed information of SNP:
|
SNP ID:
sf1001427857(Gbrowse)
Chromosome: chr10 Position: 1427857 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.71% | 35.29% |
| All Indica | 798 | 68.67% | 31.33% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001427857 | T->C | INTERGENIC | None |