Detailed information of SNP:
|
SNP ID:
sf1001433977(Gbrowse)
Chromosome: chr10 Position: 1433977 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 80.03% | 19.97% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 51.51% | 48.49% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001433977 | T->C | INTERGENIC | None |