Detailed information of SNP:
|
SNP ID:
sf1001444251(Gbrowse)
Chromosome: chr10 Position: 1444251 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 79.77% | 20.23% |
| All Indica | 785 | 89.17% | 10.83% |
| All Japonica | 477 | 64.36% | 35.64% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 85.25% | 14.75% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 330 | 78.48% | 21.52% |
| Tropical Japonica | 85 | 25.88% | 74.12% |
| Japonica Intermediate | 62 | 41.94% | 58.06% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001444251 | T->A | LOC_Os10g03390(LOC_Os10g03390.1) | Non-Synonymous SNP |