Detailed information of SNP:
|
SNP ID:
sf1001444978(Gbrowse)
Chromosome: chr10 Position: 1444978 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 62.08% | 37.92% |
| All Indica | 797 | 65.75% | 34.25% |
| All Japonica | 493 | 52.74% | 47.26% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 57.75% | 42.25% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 334 | 70.66% | 29.34% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001444978 | C->T | INTERGENIC | None |