Detailed information of SNP:
|
SNP ID:
sf1001445613(Gbrowse)
Chromosome: chr10 Position: 1445613 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 81.20% | 18.80% |
| All Indica | 796 | 76.88% | 23.12% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 75.87% | 24.13% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001445613 | C->T | INTERGENIC | None |