Detailed information of SNP:
|
SNP ID:
sf1001447104(Gbrowse)
Chromosome: chr10 Position: 1447104 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 61.98% | 38.02% |
| All Indica | 797 | 37.14% | 62.86% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 44.12% | 55.88% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 210 | 26.19% | 73.81% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001447104 | T->C | LOC_Os10g03400(LOC_Os10g03400.2) | Synonymous |