Detailed information of SNP:



SNP ID: sf1001456290(Gbrowse)

Chromosome: chr10

Position: 1456290
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1414 94.27% 5.73%
All Indica794 97.86% 2.14%
All Japonica497 98.79% 1.21%
Aus67 26.87% 73.13%
Indica I375 99.20% 0.80%
Indica II211 99.53% 0.47%
Indica Intermediate208 93.75% 6.25%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1001456290 G->A INTERGENIC None