Detailed information of SNP:
|
SNP ID:
sf1001456290(Gbrowse)
Chromosome: chr10 Position: 1456290 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 94.27% | 5.73% |
| All Indica | 794 | 97.86% | 2.14% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001456290 | G->A | INTERGENIC | None |