Detailed information of SNP:
|
SNP ID:
sf1001456622(Gbrowse)
Chromosome: chr10 Position: 1456622 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 77.77% | 22.23% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 47.38% | 52.62% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 28.44% | 71.56% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001456622 | C->T | INTERGENIC | None |