Detailed information of SNP:
|
SNP ID:
sf1001458912(Gbrowse)
Chromosome: chr10 Position: 1458912 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 94.64% | 5.36% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001458912 | C->T | INTERGENIC | None |