Detailed information of SNP:



SNP ID: sf1001499398(Gbrowse)

Chromosome: chr10

Position: 1499398
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1410 78.65% 21.35%
All Indica791 69.79% 30.21%
All Japonica497 98.19% 1.81%
Aus67 32.84% 67.16%
Indica I372 62.10% 37.90%
Indica II212 75.00% 25.00%
Indica Intermediate207 78.26% 21.74%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 80.49% 19.51%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1001499398 C->T INTERGENIC None