Detailed information of SNP:
|
SNP ID:
sf1001499398(Gbrowse)
Chromosome: chr10 Position: 1499398 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 78.65% | 21.35% |
| All Indica | 791 | 69.79% | 30.21% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 372 | 62.10% | 37.90% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 207 | 78.26% | 21.74% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001499398 | C->T | INTERGENIC | None |