Detailed information of SNP:
|
SNP ID:
sf1001511308(Gbrowse)
Chromosome: chr10 Position: 1511308 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 73.15% | 26.85% |
| All Indica | 730 | 88.08% | 11.92% |
| All Japonica | 496 | 55.24% | 44.76% |
| Aus | 61 | 26.23% | 73.77% |
| Indica I | 333 | 84.68% | 15.32% |
| Indica II | 198 | 89.39% | 10.61% |
| Indica Intermediate | 199 | 92.46% | 7.54% |
| Temperate Japonica | 334 | 35.63% | 64.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001511308 | C->T | INTERGENIC | None |