Detailed information of SNP:
|
SNP ID:
sf1001522089(Gbrowse)
Chromosome: chr10 Position: 1522089 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 51.62% | 48.38% |
| All Indica | 768 | 85.16% | 14.84% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 357 | 83.19% | 16.81% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001522089 | A->G | INTERGENIC | None |