Detailed information of SNP:



SNP ID: sf1001527238(Gbrowse)

Chromosome: chr10

Position: 1527238
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 80.47% 19.53%
All Indica798 66.17% 33.83%
All Japonica497 99.60% 0.40%
Aus67 98.51% 1.49%
Indica I375 54.93% 45.07%
Indica II213 73.71% 26.29%
Indica Intermediate210 78.57% 21.43%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1001527238 G->A INTERGENIC None