Detailed information of SNP:
|
SNP ID:
sf1001592581(Gbrowse)
Chromosome: chr10 Position: 1592581 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 86.67% | 13.33% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 490 | 70.41% | 29.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 332 | 83.73% | 16.27% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 65 | 61.54% | 38.46% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001592581 | C->T | INTERGENIC | None |