Detailed information of SNP:
|
SNP ID:
sf1001622944(Gbrowse)
Chromosome: chr10 Position: 1622944 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001622944 | T->G | LOC_Os10g03660(LOC_Os10g03660.1) | Non-Synonymous SNP |