Detailed information of SNP:
|
SNP ID:
sf1001636962(Gbrowse)
Chromosome: chr10 Position: 1636962 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 54.52% | 45.48% |
| All Indica | 759 | 29.38% | 70.62% |
| All Japonica | 492 | 98.58% | 1.42% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 347 | 38.62% | 61.38% |
| Indica II | 206 | 27.67% | 72.33% |
| Indica Intermediate | 206 | 15.53% | 84.47% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001636962 | A->G | INTERGENIC | None |