Detailed information of SNP:
|
SNP ID:
sf1001637619(Gbrowse)
Chromosome: chr10 Position: 1637619 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 75.52% | 24.48% |
| All Indica | 736 | 55.98% | 44.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 61.14% | 38.86% |
| Indica II | 198 | 52.02% | 47.98% |
| Indica Intermediate | 188 | 50.53% | 49.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001637619 | G->A | INTERGENIC | None |