Detailed information of SNP:
|
SNP ID:
sf1001638846(Gbrowse)
Chromosome: chr10 Position: 1638846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 51.27% | 48.73% |
| All Indica | 796 | 23.37% | 76.63% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 373 | 31.10% | 68.90% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 210 | 14.29% | 85.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001638846 | G->A | INTERGENIC | None |