Detailed information of SNP:
|
SNP ID:
sf1001651743(Gbrowse)
Chromosome: chr10 Position: 1651743 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 59.81% | 40.19% |
| All Indica | 750 | 32.13% | 67.87% |
| All Japonica | 491 | 99.80% | 0.20% |
| Aus | 45 | 64.44% | 35.56% |
| Indica I | 351 | 37.32% | 62.68% |
| Indica II | 200 | 29.00% | 71.00% |
| Indica Intermediate | 199 | 26.13% | 73.87% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 69.44% | 30.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001651743 | T->C | INTERGENIC | None |