Detailed information of SNP:
|
SNP ID:
sf1001789658(Gbrowse)
Chromosome: chr10 Position: 1789658 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.76% | 9.24% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001789658 | G->A | LOC_Os10g03940(LOC_Os10g03940.1) | INTRON |