Detailed information of SNP:
|
SNP ID:
sf1001789900(Gbrowse)
Chromosome: chr10 Position: 1789900 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 91.88% | 8.12% |
| All Indica | 797 | 94.48% | 5.52% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001789900 | C->T | INTERGENIC | None |