Detailed information of SNP:
|
SNP ID:
sf1001813583(Gbrowse)
Chromosome: chr10 Position: 1813583 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 97.82% | 2.18% |
| All Indica | 759 | 96.05% | 3.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 96.94% | 3.06% |
| Indica II | 199 | 95.98% | 4.02% |
| Indica Intermediate | 201 | 94.53% | 5.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001813583 | G->A | LOC_Os10g03980(LOC_Os10g03980.1) | Non-Synonymous SNP |