Detailed information of SNP:
|
SNP ID:
sf1001831108(Gbrowse)
Chromosome: chr10 Position: 1831108 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 64.71% | 35.29% |
| All Indica | 797 | 38.90% | 61.10% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 50.53% | 49.47% |
| Indica II | 212 | 33.02% | 66.98% |
| Indica Intermediate | 211 | 24.17% | 75.83% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001831108 | C->G | INTERGENIC | None |