Detailed information of SNP:
|
SNP ID:
sf1001889125(Gbrowse)
Chromosome: chr10 Position: 1889125 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 63.28% | 36.72% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001889125 | C->A | LOC_Os10g04090(LOC_Os10g04090.1) | UTR_3_PRIME |