Detailed information of SNP:
|
SNP ID:
sf1001911605(Gbrowse)
Chromosome: chr10 Position: 1911605 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 68.54% | 31.46% |
| All Indica | 795 | 96.23% | 3.77% |
| All Japonica | 473 | 19.03% | 80.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 328 | 10.37% | 89.63% |
| Tropical Japonica | 83 | 40.96% | 59.04% |
| Japonica Intermediate | 62 | 35.48% | 64.52% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001911605 | T->C | INTERGENIC | None |