Detailed information of SNP:
|
SNP ID:
sf1001911753(Gbrowse)
Chromosome: chr10 Position: 1911753 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 88.57% | 11.43% |
| All Indica | 791 | 81.04% | 18.96% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 370 | 68.92% | 31.08% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001911753 | C->T | INTERGENIC | None |