Detailed information of SNP:
|
SNP ID:
sf1001912149(Gbrowse)
Chromosome: chr10 Position: 1912149 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 88.75% | 11.25% |
| All Indica | 794 | 81.36% | 18.64% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 371 | 69.81% | 30.19% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001912149 | C->A | LOC_Os10g04130(LOC_Os10g04130.1) | UTR_5_PRIME |