Detailed information of SNP:
|
SNP ID:
sf1001963451(Gbrowse)
Chromosome: chr10 Position: 1963451 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 72.45% | 27.55% |
| All Indica | 776 | 93.69% | 6.31% |
| All Japonica | 497 | 38.43% | 61.57% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 360 | 91.67% | 8.33% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 41.79% | 58.21% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001963451 | C->G | INTERGENIC | None |