Detailed information of SNP:
|
SNP ID:
sf1001966581(Gbrowse)
Chromosome: chr10 Position: 1966581 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 96.66% | 3.34% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 487 | 91.17% | 8.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 87 | 73.56% | 26.44% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001966581 | C->T | INTERGENIC | None |