Detailed information of SNP:
|
SNP ID:
sf1001980232(Gbrowse)
Chromosome: chr10 Position: 1980232 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 86.39% | 13.61% |
| All Indica | 791 | 97.22% | 2.78% |
| All Japonica | 497 | 67.20% | 32.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001980232 | A->G | LOC_Os10g04250(LOC_Os10g04250.1) | Non-Synonymous SNP |