Detailed information of SNP:
|
SNP ID:
sf1001995490(Gbrowse)
Chromosome: chr10 Position: 1995490 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.32% | 14.68% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 496 | 68.15% | 31.85% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 62.57% | 37.43% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001995490 | T->C | INTERGENIC | None |