Detailed information of SNP:
|
SNP ID:
sf1002029567(Gbrowse)
Chromosome: chr10 Position: 2029567 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 81.71% | 18.29% |
| All Indica | 768 | 92.19% | 7.81% |
| All Japonica | 496 | 62.30% | 37.70% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 351 | 88.60% | 11.40% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 334 | 57.49% | 42.51% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002029567 | T->C | LOC_Os10g04290(LOC_Os10g04290.1) | Non-Synonymous SNP |