Detailed information of SNP:
|
SNP ID:
sf1002044240(Gbrowse)
Chromosome: chr10 Position: 2044240 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 52.41% | 47.59% |
| All Indica | 792 | 26.01% | 73.99% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 370 | 34.86% | 65.14% |
| Indica II | 212 | 18.87% | 81.13% |
| Indica Intermediate | 210 | 17.62% | 82.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002044240 | G->C | LOC_Os10g04342(LOC_Os10g04342.1) | INTRON |