Detailed information of SNP:
|
SNP ID:
sf1002048317(Gbrowse)
Chromosome: chr10 Position: 2048317 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.41% | 48.59% |
| All Indica | 798 | 80.33% | 19.67% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 72.73% | 27.27% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002048317 | G->A | LOC_Os10g04342(LOC_Os10g04342.1) | INTRON |