Detailed information of SNP:
|
SNP ID:
sf1002048681(Gbrowse)
Chromosome: chr10 Position: 2048681 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.29% | 47.71% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002048681 | A->G | LOC_Os10g04342(LOC_Os10g04342.1) | INTRON |