Detailed information of SNP:
|
SNP ID:
sf1002060037(Gbrowse)
Chromosome: chr10 Position: 2060037 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 93.75% | 6.25% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 490 | 83.06% | 16.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 82.48% | 17.52% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002060037 | A->G | INTERGENIC | None |