Detailed information of SNP:
|
SNP ID:
sf1002089247(Gbrowse)
Chromosome: chr10 Position: 2089247 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1258 | 65.42% | 34.58% |
| All Indica | 780 | 95.77% | 4.23% |
| All Japonica | 359 | 1.39% | 98.61% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 203 | 90.64% | 9.36% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 203 | 0.49% | 99.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 62 | 1.61% | 98.39% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002089247 | T->C | LOC_Os10g04429(LOC_Os10g04429.1) | INTRON |