Detailed information of SNP:
|
SNP ID:
sf1002089258(Gbrowse)
Chromosome: chr10 Position: 2089258 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 83.74% | 16.26% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 487 | 59.96% | 40.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 328 | 78.66% | 21.34% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002089258 | C->T | LOC_Os10g04429(LOC_Os10g04429.1) | INTRON |