Detailed information of SNP:
|
SNP ID:
sf1002101811(Gbrowse)
Chromosome: chr10 Position: 2101811 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 95.48% | 4.52% |
| All Indica | 785 | 94.01% | 5.99% |
| All Japonica | 465 | 96.99% | 3.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 95.92% | 4.08% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 305 | 95.74% | 4.26% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002101811 | C->T | INTERGENIC | None |