Detailed information of SNP:
|
SNP ID:
sf1002105124(Gbrowse)
Chromosome: chr10 Position: 2105124 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.55% | 33.45% |
| All Indica | 798 | 82.33% | 17.67% |
| All Japonica | 497 | 45.07% | 54.93% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 27.76% | 72.24% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002105124 | A->T | INTERGENIC | None |