Detailed information of SNP:



SNP ID: sf1002107616(Gbrowse)

Chromosome: chr10

Position: 2107616
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 92.09% 7.91%
All Indica797 86.20% 13.80%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I374 76.47% 23.53%
Indica II213 99.06% 0.94%
Indica Intermediate210 90.48% 9.52%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1002107616 T->C LOC_Os10g04470(LOC_Os10g04470.1) Non-Synonymous SNP